Publications

Jonathan B Puritz, Ximing Guo, Matthew Hare, Yan He, LaDeana W Hillier, Shubo Jin, Ming Liu, Katie E Lotterhos, Pat Minx, Tejashree Modak, others (2024). A second unveiling: Haplotig masking of the eastern oyster genome improves population-level inference. Molecular Ecology Resources.

O Selma Klanten, Mailie Gall, Sergio S Barbosa, Michael W Hart, Carson C Keever, Jonathan B Puritz, Januar Harantio, Robert J Toonen, Paulina Selvakumaraswamy, Richard K Grosberg, others (2023). Population connectivity across east Australia's bioregions and larval duration of the range-extending sea star Meridiastra calcar. Aquatic Conservation: Marine and Freshwater Ecosystems.

Ximing Guo, Jonathan B Puritz, Zhenwei Wang, Dina Proestou, Standish Allen Jr, Jessica Small, Klara Verbyla, Honggang Zhao, Jaime Haggard, Noah Chriss, others (2023). Development and evaluation of high-density SNP arrays for the Eastern oyster Crassostrea virginica. Marine Biotechnology.

Samuel N Bogan, Jason Johns, Joanna S Griffiths, Danielle Davenport, Sara J Smith, Sara M Schaal, Alan Downey-Wall, Runyang Nicolas Lou, Katie Lotterhos, Megan E Guidry, others (2023). A dynamic web resource for robust and reproducible genomics in nonmodel species: marineomics.io. Methods in Ecology and Evolution.

Jonathan B Puritz, Honggang Zhao, Ximing Guo, Matthew P Hare, Yan He, Jerome LaPeyre, Katie E Lotterhos, Kathryn Markey Lundgren, Tejashree Modak, Dina Proestou, others (2022). Nucleotide and structural polymorphisms of the eastern oyster genome paint a mosaic of divergence, selection, and human impacts. BioRxiv.

Lauren M Schiebelhut, Melina Giakoumis, Rita Castilho, Paige J Duffin, Jonathan B Puritz, John P Wares, Gary M Wessel, Michael N Dawson (2022). Minor Genetic Consequences of a Major Mass Mortality: Short-Term Effects in Pisaster ochraceus. The Biological Bulletin.

Shelly A Trigg, Yaamini R Venkataraman, Mackenzie R Gavery, Steven B Roberts, Debashish Bhattacharya, Alan Downey-Wall, Jose M Eirin-Lopez, Kevin M Johnson, Katie E Lotterhos, Jonathan B Puritz, others (2022). Invertebrate methylomes provide insight into mechanisms of environmental tolerance and reveal methodological biases. Molecular Ecology Resources.

David S Portnoy, Andrew T Fields, Jonathan B Puritz, Christopher M Hollenbeck, William F Patterson III (2022). Genomic analysis of red snapper, Lutjanus campechanus, population structure in the US Atlantic and Gulf of Mexico. ICES Journal of Marine Science.

Stuart C Willis, Christopher M Hollenbeck, Jonathan B Puritz, David S Portnoy (2022). Genetic recruitment patterns are patchy and spatiotemporally unpredictable in a deep-water snapper (Lutjanus vivanus) sampled in fished and protected areas of western Puerto Rico. Conservation Genetics.

Katrina A Catalano, Allison G Dedrick, Michelle R Stuart, Jonathan B Puritz, Humberto R Montes Jr, Malin L Pinsky (2021). Quantifying dispersal variability among nearshore marine populations. Molecular Ecology.

Tejashree H Modak, Robert Literman, Jonathan B Puritz, Kevin M Johnson, Erin M Roberts, Dina Proestou, Ximing Guo, Marta Gomez-Chiarri, Rachel S Schwartz (2021). Extensive genome-wide duplications in the eastern oyster (Crassostrea virginica). Philosophical Transactions of the Royal Society B.

Michael W Hart, Jonathan B Puritz (2020). Correction to ‘Extraordinarily rapid life-history divergence between Cryptasterina sea star species'. Proceedings of the Royal Society B.

Shannon J O'Leary, Jonathan B Puritz, Stuart C Willis, Christopher M Hollenbeck, David S Portnoy (2018). These aren’t the loci you’e looking for: Principles of effective SNP filtering for molecular ecologists.

Jonathan B Puritz, Katie E Lotterhos (2018). Expressed exome capture sequencing: A method for cost-effective exome sequencing for all organisms. Molecular Ecology Resources.

Lauren M Schiebelhut, Jonathan B Puritz, Michael N Dawson (2018). Decimation by sea star wasting disease and rapid genetic change in a keystone species, Pisaster ochraceus. Proceedings of the National Academy of Sciences.

Jonathan B Puritz, Carson C Keever, Jason A Addison, Sergio S Barbosa, Maria Byrne, Michael W Hart, Richard K Grosberg, Robert J Toonen (2017). Life-history predicts past and present population connectivity in two sympatric sea stars. Ecology and evolution.

Stuart C Willis, Christopher M Hollenbeck, Jonathan B Puritz, John R Gold, David S Portnoy (2017). Haplotyping RAD loci: an efficient method to filter paralogs and account for physical linkage. Molecular Ecology Resources.

Jonathan B Puritz, John R Gold, David S Portnoy (2016). Fine-scale partitioning of genomic variation among recruits in an exploited fishery: causes and consequences. Scientific reports.

Kimberly A Selkoe, Cassidy CD Aloia, Eric D Crandall, Matthew Iacchei, Libby Liggins, Jonathan B Puritz, Sophie von der Heyden, Robert J Toonen (2016). A decade of seascape genetics: contributions to basic and applied marine connectivity. Marine Ecology Progress Series.

DS Portnoy, Jonathan B Puritz, Christopher M Hollenbeck, J Gelsleichter, D Chapman, JR Gold (2015). Selection and sex-biased dispersal in a coastal shark: The influence of philopatry on adaptive variation. Molecular Ecology.

JR Gold, SC Willis, MA Renshaw, A Buentello, HJ Walker Jr, JB Puritz, CM Hollenbeck, G Voelker (2015). Phylogenetic relationships of tropical eastern Pacific snappers (Lutjanidae) inferred from mitochondrial DNA sequences. Systematics and Biodiversity.

JB Puritz, MA Renshaw, D Abrego, RR Vega, JR Gold (2014). Reproductive variance of brood dams and sires used in restoration enhancement of spotted seatrout in Texas bays and estuaries. North American Journal of Aquaculture.

Jonathan B Puritz, Mikhail V Matz, Robert J Toonen, Jesse N Weber, Daniel I Bolnick, Christopher E Bird (2014). Demystifying the RAD fad.

Jonathan B. Puritz, Christopher M. Hollenbeck, John R. Gold (2014). dDocent: a RADseq, variant-calling pipeline designed for population genomics of non-model organisms. PeerJ.

Sergio S Barbosa, Selma O Klanten, Jonathan B Puritz, Robert J Toonen, Maria Byrne (2013). Very fine-scale population genetic structure of sympatric asterinid sea stars with benthic and pelagic larvae: influence of mating system and dispersal potential. Biological Journal of the Linnean Society.

Kimberly R Andrews, William F Perrin, Marc Oremus, Leszek Karczmarski, Brian W Bowen, Jonathan B Puritz, Robert J Toonen (2013). The evolving male: spinner dolphin (S tenella longirostris) ecotypes are divergent at Y chromosome but not mt DNA or autosomal markers. Molecular Ecology.

Carson C Keever, Jonathan B Puritz, Jason A Addison, Maria Byrne, Richard K Grosberg, Robert J Toonen, Michael W Hart (2013). Shallow gene pools in the high intertidal: extreme loss of genetic diversity in viviparous sea stars (Parvulastra). Biology Letters.

Jonathan B Puritz, Robert J Toonen (2013). Next-generation sequencing for high-throughput molecular ecology: a step-by-step protocol for targeted multilocus genotyping by pyrosequencing. Microsatellites: Methods and Protocols.

Robert J Toonen, Jonathan B Puritz, Zac H Forsman, Jonathan L Whitney, Iria Fernandez-Silva, Kimberly R Andrews, Christopher E Bird (2013). ezRAD: a simplified method for genomic genotyping in non-model organisms. PeerJ.

Jonathan B Puritz, Jason A Addison, Robert J Toonen (2012). Next-Generation Phylogeography: A Targeted Approach for Multilocus Sequencing of Non-Model Organisms. PLoS ONE.

Jonathan B Puritz, Carson C Keever, Jason A Addison, Maria Byrne, Michael W Hart, Richard K Grosberg, Robert J Toonen (2012). Extraordinarily rapid life-history divergence between Cryptasterina sea star species. Proceedings of the Royal Society B: Biological Sciences.

Toonen Robert J, Andrews Kimberly R, Baums Iliana B, Bird Christopher E, Concepcion Gregory T, Daly-Engel Toby S, Eble Jeff A, Faucci Anuschka, Gaither Michelle R, Iacchei Matthew, others (2011). Defining boundaries for Ecosystem-based management: a multispecies case study of marine connectivity across the Hawaiian Archipelago. Journal of Marine Biology.

Jonathan B Puritz, Robert J Toonen (2011). Coastal pollution limits pelagic larval dispersal. Nature Communications.

Robert A Haney, Michelle Dionne, Jon Puritz, David M Rand (2009). The comparative phylogeography of east coast estuarine fishes in formerly glaciated sites: persistence versus recolonization in Cyprinodon variegatus ovinus and Fundulus heteroclitus macrolepidotus. Journal of Heredity.

Carson C Keever, Jennifer Sunday, Jonathan B Puritz, Jason A Addison, Robert J Toonen, Richard K Grosberg, Michael W Hart (2009). Discordant distribution of populations and genetic variation in a sea star with high dispersal potential. Evolution.

Anna N Walker, Parshall Bush, Jonathan B Puritz, Thomas Wilson, Ernest S Chang, Tim Miller, Kenneth Holloway, Michael N Horst (2005). Bioaccumulation and metabolic effects of the endocrine disruptor methoprene in the lobster, Homarus americanus. Integrative and Comparative Biology.

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